| Line 14: | Line 14: | ||
*[http://ccy.zcu.cz/files/ZMB_2017/MATLAB/plotshaded.m plotshaded.m (Matlab support function for plotCells.m)] | *[http://ccy.zcu.cz/files/ZMB_2017/MATLAB/plotshaded.m plotshaded.m (Matlab support function for plotCells.m)] | ||
*[http://ccy.zcu.cz/files/ZMB_2017/MATLAB/plotCells.m plotCells.m (Matlab function for plotting CeCe results)] | *[http://ccy.zcu.cz/files/ZMB_2017/MATLAB/plotCells.m plotCells.m (Matlab function for plotting CeCe results)] | ||
| − | * example call of plotCells.m: plotCells('molecules.csv','RFP',{'GFP','RFP','LACI','LACIi','G','Gi','Ga','Gia','ARA','ARAC','ARACa'},10,1,1) | + | * example call of plotCells.m: |
| + | plotCells('molecules.csv','RFP',{'GFP','RFP','LACI','LACIi','G','Gi','Ga','Gia','ARA','ARAC','ARACa'},10,1,1) | ||
CECE | CECE | ||
Latest revision as of 13:53, 12 May 2017
Lectures
- LECTURE 1 (Overview of Synthetic Biology)
- LECTURE 2 (Genetic network schematics)
- LECTURE 3 (Solving Chemical Reaction Networks)
- for lectures on gene expression, one-node, two-node, three-node, multi-node motifs see notes
Assignment
MATLAB
- gelProcess.m (Matlab script for computing gel intensities)
- plotshaded.m (Matlab support function for plotCells.m)
- plotCells.m (Matlab function for plotting CeCe results)
- example call of plotCells.m:
plotCells('molecules.csv','RFP',{'GFP','RFP','LACI','LACIi','G','Gi','Ga','Gia','ARA','ARAC','ARACa'},10,1,1)
CECE
- channel-straight.svg (straight channel topology)
- channel-chamber.svg (example of a channel chamber)
- ZMB_NAR.cece (NAR simulation file)
EXPERIMENTS
