Fatkaj at 07:09, 31 August 2015

2015-08-31T07:09:42Z

Georgiev at 09:15, 30 August 2015

2015-08-30T09:15:28Z

Georgiev at 09:15, 30 August 2015

2015-08-30T09:15:04Z

Georgiev: Created page with " ..."

2015-08-30T09:14:36Z

Created page with "<?xml version="1.0" encoding="UTF-8" standalone="yes" ?>  <simulation world-size="100um 100um" dt="1ms" aiterations="1000" background="white">..."

New page

<?xml version="1.0" encoding="UTF-8" standalone="yes" ?>

<simulation world-size="100um 100um" dt="1ms" aiterations="1000" background="white">
<parameter name="t1" value=".000001uM" />
<parameter name="t2" value=".004uM" />
<program name="cell1" language="stochastic-reactions-intercellular">
<![CDATA[
if env_S2 > t1: null <.1, 1000 > LM5;
if env_S2 > t1: null > 2000 > BFP;
if env_S2 > t1: null > 20000 > env_S3;
null > 1000 > env_S1;
]]>
</program>

<program name="cell2" language="stochastic-reactions-intercellular">
<![CDATA[
if env_S1 > t2: null > 2000 > env_S2;
if env_S1 > t2: null < .1, 1000 > LM5;
]]>
</program>









<module name="agglutination">
<bond ligand="LM1" receptor="LM3" association-constant="100" disassociation-constant="0" />
<bond ligand="LM2" receptor="LM4" association-constant="100" disassociation-constant="0" />
<bond ligand="LM5" receptor="LM6" association-constant="100" disassociation-constant="0" />
<bond ligand="LM7" receptor="LM8" association-constant="100" disassociation-constant="0" />
</module>


<module name="diffusion" grid="800 400">
<signal name="S2" diffusion-rate="50um2/s" degradation-rate=".01/s" color = "red" saturation=".01uM" />
<signal name="S1" diffusion-rate="50um2/s" degradation-rate=".01/s" color = "white" saturation=".01uM" />

<signal name="S3" diffusion-rate="50um2/s" degradation-rate=".01/s" color = "green" saturation=".001uM" />

</module>

<object class="cell.Yeast" position="0um 0um" programs="cell1">
<molecule name="LM3" amount="1000" />
<molecule name="LM6" amount="1000" />
<molecule name="BFP" amount="10" />
</object>
<object class="cell.Yeast" position="-4.5um 0um" programs="cell2">
<molecule name="LM4" amount="1000" />
<molecule name="LM6" amount="1000" />
<molecule name="BFP" amount="100" />
</object>

</simulation>

@@ Line 1: / Line 1: @@
 <?xml version="1.0" encoding="UTF-8" standalone="yes" ?>
 <!-- Simulation definition -->
@@ Line 88: / Line 90: @@
 </simulation>

Signal sensing failure 1 - Revision history

Fatkaj at 07:09, 31 August 2015

Georgiev at 09:15, 30 August 2015

Georgiev at 09:15, 30 August 2015

Georgiev: Created page with " ..."