• SYLLABUS

Lectures

• LECTURE 1 (Overview of Synthetic Biology)
• LECTURE 2 (Genetic network schematics)
• LECTURE 3 (Solving Chemical Reaction Networks)
• for lectures on gene expression, one-node, two-node, three-node, multi-node motifs see notes

Assignment

• Final Project

MATLAB

• gelProcess.m (Matlab script for computing gel intensities)
• plotshaded.m (Matlab support function for plotCells.m)
• plotCells.m (Matlab function for plotting CeCe results)
• example call of plotCells.m:

plotCells('molecules.csv','RFP',{'GFP','RFP','LACI','LACIi','G','Gi','Ga','Gia','ARA','ARAC','ARACa'},10,1,1)

CECE

• channel-straight.svg (straight channel topology)
• channel-chamber.svg (example of a channel chamber)
• ZMB_NAR.cece (NAR simulation file)

EXPERIMENTS

• Agarose gel electrophoresis for PCR kinetic assay